FastQCFastQC Report
Wed 8 May 2024
EGAF00007960337

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960337
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences573344
Total Bases17.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA10160.17720600546966567No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9950.17354328291566667No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9560.16674108388681141No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7820.13639281129653402No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7420.1294161969079645No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7000.12209075179996651No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6780.11825361388625329No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6480.11302115309482613No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6120.10674220014511358No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)