FastQCFastQC Report
Wed 8 May 2024
EGAF00007960338

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960338
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences548322
Total Bases24.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT7360.13422769832324802No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT7330.1336805745529087No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6490.11836110898340756No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5900.10760100816673414No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5850.1066891352161686No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)