FastQCFastQC Report
Wed 8 May 2024
EGAF00007960339

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960339
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences548322
Total Bases16.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45790.8350932481279247No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9480.17289111142722707No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8690.15848351880829148No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7300.13313345078256936No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6860.1251089688175926No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6660.12146147701533042No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6380.11635498849216336No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5770.10523013849526373No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5520.10067077374243602No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)