FastQCFastQC Report
Wed 8 May 2024
EGAF00007960340

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960340
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences570949
Total Bases25.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT7420.12995906814794317No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT7370.12908333318737752No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7340.1285578922110381No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6120.10718995917323614No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6040.10578878323633109No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)