FastQCFastQC Report
Wed 8 May 2024
EGAF00007960341

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960341
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences570949
Total Bases17.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10290.18022625488441174No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9520.16673993649170066No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9490.16621449551536127No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7620.13346200799020577No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7550.13223597904541387No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7380.12925848017949063No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6990.12242774748707852No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6010.10526334225999169No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5880.10298643136252099No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5790.10141010843350282No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)