FastQCFastQC Report
Wed 8 May 2024
EGAF00007960342

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960342
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences556463
Total Bases24.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT7450.13388131825476265No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT7180.12902924363344914No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6840.12291922373994317No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6130.1101600645505631No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)