FastQCFastQC Report
Wed 8 May 2024
EGAF00007960343

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960343
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences556463
Total Bases17.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44250.7952011184930534No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9990.17952676098860124No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9270.1665878953317651No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7270.13064660184055366No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6870.12345834314231134No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6750.12130186553283866No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6460.116090377976613No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6080.10926153221328282No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)