FastQCFastQC Report
Wed 8 May 2024
EGAF00007960345

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960345
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511608
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15940.31156666823036383No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13920.27208331378711825No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10040.19624399931197323No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9440.18451627026942502No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8280.16184266078716517No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7370.14405560507263374No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7340.14346921862050632No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7210.14092821066128755No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6290.12294569279604699No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6260.12235930634391956No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5730.11199981235633533No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5370.1049631749308064No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5190.10144485621804195No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)