FastQCFastQC Report
Wed 8 May 2024
EGAF00007960347

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960347
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490829
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42500.865882007786826No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14400.2933811979324775No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13810.2813607182949663No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8910.18152961622072045No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7630.15545128751561135No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7150.14567191425119544No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6780.13813364735987482No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6770.13792991041686617No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6310.12855801103846756No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6120.12468700912130293No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5250.1069618950795491No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)