FastQCFastQC Report
Wed 8 May 2024
EGAF00007960349

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960349
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513069
Total Bases15.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15110.29450229891106267No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14080.27442702638436545No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10000.1949055585116232No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9840.19178706957543723No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8100.15787350239441478No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7740.15085690228799636No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7570.14754350779329875No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6830.13312049646343863No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6250.12181597406976451No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6180.12045163516018313No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5830.11362994061227631No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5300.10329994601116028No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)