FastQCFastQC Report
Wed 8 May 2024
EGAF00007960351

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960351
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499170
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42670.8548189995392351No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16000.32053208325820864No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13220.2648396337920949No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9420.18871326401827032No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7530.15085041168339444No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7420.14864675361099425No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6930.1388304585612116No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6490.13001582627161087No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6050.12120119398201014No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5990.11999919866979185No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5810.11639321273313702No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5440.10898090830779093No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)