FastQCFastQC Report
Wed 8 May 2024
EGAF00007960355

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960355
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences397279
Total Bases12.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT52141.3124277900417591No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32690.8228474195716361No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27310.6874262168400544No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26470.6662823859302909No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT25830.6501728004752327No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG25270.6360769132020571No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16890.42514202864989087No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16380.41230470274039155No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA15290.3848680650122458No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15150.38134409319395185No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14640.36850676728445253No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG14190.3571797150113648No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12770.3214365722829548No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12580.31665403910098444No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10730.27008726864495736No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10420.2622841881901636No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9740.24516775364416443No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9250.23283385228013562No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9100.22905816818910638No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8430.2121934459158425No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT8370.21068317227943084No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8060.20288009182463707No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA7890.19860098318813732No Hit
GCGCGCGGCTCCACCTACGGTACCCCGCGTC7470.18802906773325548No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7270.18299482227854985No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7240.182239685460344No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7170.180477699551197No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7020.17670201546016778No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6520.1641164018234037No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6140.154551335459463No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5970.1502722268229632No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5790.14574140591372814No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5600.14095887273175778No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5370.1351694904588463No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5350.13466606591337574No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4620.11629107000370018No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4620.11629107000370018No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG4420.11125682454899453No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4330.10899141409437701No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)