FastQCFastQC Report
Wed 8 May 2024
EGAF00007960361

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960361
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences564105
Total Bases17.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA37300.6612244174400156No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24650.4369753857881068No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16320.2893078416252293No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT15150.26856702209695005No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14940.26484431089956656No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT13500.2393171484032228No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10910.19340371030216005No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9780.1733719786210014No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA8890.15759477402256672No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8660.15351751890162293No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7400.13118125171732212No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7320.12976307602308082No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6700.11877221439271057No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6500.11522677515710728No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6190.10973134434192217No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5810.1029950097942759No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5710.10122229017647424No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)