FastQCFastQC Report
Wed 8 May 2024
EGAF00007960363

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960363
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences539095
Total Bases16.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43940.8150697001456144No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA34670.6431148498873112No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23010.4268264406087981No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15580.28900286591417096No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14890.2762036375777924No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT12600.2337250391860433No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT12480.2314990864318905No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10140.18809300772591103No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8150.15117929121954388No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA8090.15006631484246746No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6910.12817777942663167No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6880.1276212912380935No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6310.1170480156558677No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6270.11630603140448345No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5630.10443428338233521No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5500.10202283456533635No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)