FastQCFastQC Report
Wed 8 May 2024
EGAF00007960365

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960365
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences562899
Total Bases17.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA37600.6679706306104647No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22730.40380245834510275No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17380.3087587648938797No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14810.2631022616846006No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT14380.2554632358558107No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT13840.2458700406289583No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10850.19275216335434955No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10210.1813824504928948No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA9380.16663735412569572No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8480.15064869541427503No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8030.14265436605856469No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7550.13412708141247365No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6790.12062554738949616No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6470.11494069095876881No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6460.11476303919530856No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5960.10588045102229707No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)