FastQCFastQC Report
Wed 8 May 2024
EGAF00007960367

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960367
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences547224
Total Bases16.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43450.7940075727672764No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA35530.6492770784907095No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23910.4369325906758476No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16050.29329853953773954No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14140.2583950996301332No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT13160.24048652836863882No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT12980.2371971989532623No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10800.1973597649225911No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA8880.16227358449190826No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7820.1429030890458021No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7320.13376606289197843No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7010.12810110667660776No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6000.10964431384588395No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5980.109278832799731No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5770.10544128181512508No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5680.10379661710743682No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)