FastQCFastQC Report
Wed 8 May 2024
EGAF00007960368

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960368
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543352
Total Bases23.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19630.361275931624435No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15160.2790088193289065No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14090.25931624434988737No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13990.25747581678175474No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12870.2368630280186693No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12630.23244600185515096No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10490.19306085189711275No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6460.1188916209013678No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6280.11557885127872908No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5560.10232777278817413No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)