FastQCFastQC Report
Wed 8 May 2024
EGAF00007960369

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960369
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543352
Total Bases16.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30650.5640910496326507No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26630.490105861393719No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15170.27919286208571975No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14430.2655736980815383No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14150.26042050089076696No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10460.19250872362667296No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8660.15938102740028565No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6600.12146821949675349No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6350.11686715057642191No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5640.10380011484268026No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5590.10287990105861393No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)