FastQCFastQC Report
Sun 21 May 2023
EGAF00007960370

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960370
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520721
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19440.3733285194950847No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14480.27807597542637996No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13890.2667455316762719No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13640.26194449618893806No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12590.2417801471421356No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12140.23313828326493458No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10690.20529227743839792No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6360.12213834279777462No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6230.11964180434436099No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5300.10178195233147885No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)