FastQCFastQC Report
Wed 8 May 2024
EGAF00007960371

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960371
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520721
Total Bases16.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41210.7914026897321215No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30810.5916796134590309No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25510.489897661127552No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13920.267321655934752No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13400.25733550212109746No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13340.25618325360413735No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10290.19761062065866367No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6510.12501896409017496No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6440.12367467415372148No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5680.10907952627222639No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5270.10120582807299879No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)