FastQCFastQC Report
Wed 8 May 2024
EGAF00007960372

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960372
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543210
Total Bases23.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20390.37536127832698224No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15650.28810220724949837No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14940.275031755674601No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13190.24281585390548777No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13160.24226358130373152No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12800.23563631008265679No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10990.2023158631100311No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6870.12647042580217596No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6350.11689770070506803No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5580.10272270392665821No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)