FastQCFastQC Report
Wed 8 May 2024
EGAF00007960373

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960373
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543210
Total Bases16.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30430.5601885090480662No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27530.5068021575449642No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15210.280002209090407No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14490.2667476666482576No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14310.26343403103772023No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11250.20710222565858508No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8990.16549768965961598No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7000.12886360707645295No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6710.12352497192614274No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5790.10658861213895178No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5680.10456361259917894No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)