FastQCFastQC Report
Wed 8 May 2024
EGAF00007960374

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960374
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526096
Total Bases23.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20000.38015875429579393No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14710.27960676378455646No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13440.2554666828867735No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13000.24710319029226605No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12320.23417779264620903No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12220.23227699887473008No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10930.20775675922265138No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6590.1252623095404641No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5830.11081627687722392No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)