FastQCFastQC Report
Wed 8 May 2024
EGAF00007960375

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960375
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526096
Total Bases16.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40910.7776147319120466No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31810.6046424987074602No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25870.49173534868160945No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13870.2636400961041331No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13530.2571773972811046No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13430.2552766035096256No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10780.2049055685654329No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6840.13001429396916153No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6120.11632857881451295No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5530.10511389556278701No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5400.10264286365986436No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)