FastQCFastQC Report
Wed 8 May 2024
EGAF00007960376

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960376
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences535657
Total Bases23.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG36080.6735653599224878No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA32210.6013176342323538No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG29930.5587530826629727No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG29370.5482986314003178No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG26720.49882667453239665No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG26720.49882667453239665No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG26700.49845330127301607No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA26300.49098583608540536No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG24280.4532751368879712No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG23870.4456209850706702No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG22640.4226585296187672No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG20330.3795339181603153No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17350.32390130251261534No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA16950.31643383732500463No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG16830.3141935977687214No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16730.3123267314718187No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG16440.30691281921080094No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG16090.30037878717164157No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG15540.2901110225386768No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG15240.28451042364796875No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG14100.26322814786327814No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG13410.2503467704146497No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT13320.24866659074743724No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG12600.23522515340973796No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12240.22850443474088827No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA11850.22122365618296785No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11810.22047690966420677No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG11280.21058251829062252No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT11210.20927571188279065No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11050.20628872580774638No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10750.20068812691703833No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG10650.19882126062013566No Hit
GTTGGTAGCGCCGGTTTCCACCGCGGTCAGCGCCGGAACTTCTT10460.19527421465602054No Hit
TGGCTGTTCGTTATCTACCTCGATGATTGCAACGCACGCACCAC9940.1855665099121266No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9130.17044489290721487No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA8330.15550996253199342No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC8290.15476321601323237No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6980.13030726752380722No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6880.12844040122690453No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6740.1258267884112408No Hit
CAGGAAGTTTTCTACAGAGGATTCAGTGCGAGAGTGGTAGTTTT6660.12433329537371862No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6650.12414660874402836No Hit
CGGCTGTTCGTTGTCGACTTCGATAATTGCAACGCAAGCGCCGC6510.1215329959283646No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6460.12059956277991327No Hit
AGATTCAACATCCGTTTCGCTACCGTTGAAGTGCATGTAGGTGG6260.11686583018610791No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6260.11686583018610791No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)