FastQCFastQC Report
Wed 8 May 2024
EGAF00007960378

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960378
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513463
Total Bases22.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG34050.6631441798143196No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA31970.6226349318256622No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG28280.5507699678457845No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA27490.5353842438500924No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG26080.5079236478577813No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG25800.5024704798593083No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG25690.5003281638599081No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG24710.48124207586525225No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG23970.46683013186928757No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG22350.4352796598781217No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG21540.4195044238825388No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG19290.3756843238948084No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16640.3240739839092593No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG16370.3188155719107316No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG15960.3108305759129675No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA15880.3092725279134037No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG15230.29661338791694825No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG15030.2927182679180389No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14660.28551229592005656No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG14300.2785010799220197No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG13240.25785694392780006No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG12940.252014263929436No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT12360.24071841593259882No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG11700.22786451993619794No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11180.2177372079390336No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11030.21481586793985155No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG10850.2113102599408331No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10660.20760989594186924No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT10610.20663611594214187No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10450.20352001994301439No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG9970.19417173194563192No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9650.18793953994737692No Hit
GTTGGTAGCGCCGGTTTCCACCGCGGTCAGCGCCGGAACTTCTT9620.1873552719475405No Hit
TGGCTGTTCGTTATCTACCTCGATGATTGCAACGCACGCACCAC9610.18716051594759506No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8210.1598946759552295No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA8210.1598946759552295No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7630.14859882795839233No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6710.13068127596340925No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6660.12970749596368192No Hit
CAGGAAGTTTTCTACAGAGGATTCAGTGCGAGAGTGGTAGTTTT6490.12639664396460892No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6430.12522810796493614No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6220.1211382319660813No Hit
AGATTCAACATCCGTTTCGCTACCGTTGAAGTGCATGTAGGTGG6210.12094347596613582No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6190.12055396396624489No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6180.12035920796629941No Hit
CGGCTGTTCGTTGTCGACTTCGATAATTGCAACGCAAGCGCCGC6170.12016445196635396No Hit

[OK]Adapter Content

Adapter graph