FastQCFastQC Report
Wed 8 May 2024
EGAF00007960380

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960380
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences534185
Total Bases23.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG35340.6615685577094078No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA33250.6224435354792816No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG29060.544006289955727No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA28370.5310894165878862No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG27860.5215421623594823No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG26910.5037580613457884No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG25670.48054512949633554No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG25600.47923472205322126No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG23320.43655287962035627No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG22810.4270056253919522No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG20780.3890038095416382No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG20200.3781461478701199No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17410.3259170512088509No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA17340.32460664376573656No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16400.3070097438153449No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG16380.3066353416887408No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG16340.3058865374355326No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG15890.2974624895869409No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG15390.28810243642183886No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG15150.2836096109025899No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG13890.26002227692653296No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG13670.2559038535338881No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT12980.24298698016604736No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12370.23156771530462292No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11830.2214588578863128No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG11700.2190252440633863No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG11420.21378361429092918No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT11380.213034810037721No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA11310.21172440259460673No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10950.2049851643157333No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10840.2029259526194109No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG10040.1879498675552477No Hit
GTTGGTAGCGCCGGTTTCCACCGCGGTCAGCGCCGGAACTTCTT9980.18682666117543548No Hit
TGGCTGTTCGTTATCTACCTCGATGATTGCAACGCACGCACCAC9850.18439304735250897No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8860.16586014208560704No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC8310.15556408360399487No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA8150.15256886659116223No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7350.13759278152699908No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6870.12860713048850117No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6840.12804552729859506No Hit
CAGGAAGTTTTCTACAGAGGATTCAGTGCGAGAGTGGTAGTTTT6840.12804552729859506No Hit
CGGCTGTTCGTTGTCGACTTCGATAATTGCAACGCAAGCGCCGC6530.12224229433623184No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6450.1207446858298155No Hit
AGATTCAACATCCGTTTCGCTACCGTTGAAGTGCATGTAGGTGG6440.12055748476651347No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6120.1145670507408482No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5860.10969982309499517No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)