FastQCFastQC Report
Wed 8 May 2024
EGAF00007960382

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960382
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521319
Total Bases22.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG34970.6707984938204823No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA32340.6203495364642378No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG29250.5610768070989164No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA27450.5265490035851369No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG27080.5194516217517489No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG26630.510819670873304No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG26150.5016122566029629No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG25470.4885684197199795No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG22940.4400376736700562No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG22720.4358176087961497No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG22470.4310220805303471No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG20230.3880541472687548No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA16440.3153539387591858No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16370.3140111908447611No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG16170.3101747682321189No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16120.3092156625789584No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG15990.30672198788074095No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG15590.2990491426554566No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG15530.297898215871664No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG14360.27545514358770734No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG13830.2652886236642056No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG13290.2549302826100718No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG12360.23709091746128572No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT12270.2353645272855967No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12070.23152810467295457No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG11730.22500618623146287No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA11340.21752516213681067No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT11150.2138805606548006No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11010.21119506482595107No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10870.2085095689971016No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG10520.2017958294249778No Hit
GTTGGTAGCGCCGGTTTCCACCGCGGTCAGCGCCGGAACTTCTT10260.19680848002854295No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10060.19297205741590082No Hit
TGGCTGTTCGTTATCTACCTCGATGATTGCAACGCACGCACCAC9660.18529921219061649No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8230.157868790510225No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA8040.15422418902821497No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7670.14712680719482696No Hit
CAGGAAGTTTTCTACAGAGGATTCAGTGCGAGAGTGGTAGTTTT6780.13005472656856934No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6620.1269855884784556No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6530.12525919830276663No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6490.1244919137802382No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6290.12065549116759605No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6200.11892910099190707No Hit
AGATTCAACATCCGTTTCGCTACCGTTGAAGTGCATGTAGGTGG6160.11816181646937864No Hit
CGGCTGTTCGTTGTCGACTTCGATAATTGCAACGCAAGCGCCGC5990.11490085724863279No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5860.11240718255041539No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG5340.10243248375754577No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)