FastQCFastQC Report
Wed 8 May 2024
EGAF00007960384

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960384
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517228
Total Bases22.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT31720.6132691965632178No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC29550.5713147780089245No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC23190.44835159736131847No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20900.4040771187948062No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19750.38184321034437424No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16460.3182348983427038No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG15640.3023811549258741No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC15240.2946476215518108No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11460.22156573116691286No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11160.21576558113636538No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9320.18019132761567433No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG8520.16472426086754777No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7120.13765689405832632No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7050.13630352571786525No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6930.13398346570564623No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6610.12779663900639562No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6610.12779663900639562No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6220.12025644396668393No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6030.11658301561400389No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5760.11136288058651118No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5540.10710943723077637No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5460.10556273055596373No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)