FastQCFastQC Report
Wed 31 May 2023
EGAF00007960385

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960385
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517228
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA68111.3168273952686245No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39380.7613663606765295No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA34330.6637305018289806No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA30180.5834950930730742No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20690.4000170137734229No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15190.2936809298800529No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11590.22407912951348344No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10310.19933182271648095No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8880.1716844409042047No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7890.1525439458033981No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7580.1465504574384991No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7550.14597044243544433No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7530.14558376576674115No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7150.13823690906138106No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7050.13630352571786525No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6870.13282343569953678No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6720.12992336068426302No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6660.12876333067815354No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6480.12528324065982507No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6170.11928975229492603No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5840.11290958726132383No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5360.1036293472124479No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)