FastQCFastQC Report
Wed 8 May 2024
EGAF00007960387

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960387
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494790
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA65281.319347602012975No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40170.8118595767901533No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36950.7467814628428222No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA32140.649568503809697No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA28790.5818630125912003No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19620.3965318620020615No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14240.2877988641645951No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10700.21625336001131795No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9870.1994785666646456No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7470.15097314012005092No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7090.1432931142504901No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7000.1414741607550678No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6940.14026152509145295No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6680.13500677054912186No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6390.1291456981749833No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6150.12429515552052385No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6060.12247620202510157No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5880.11883829503425695No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5880.11883829503425695No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5760.11641302370702722No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5290.10691404434204411No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)