FastQCFastQC Report
Wed 8 May 2024
EGAF00007960389

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960389
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516162
Total Bases16 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA67751.3125724094373472No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38210.7402714651601628No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA33570.650377207155893No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA30170.584506414652764No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20870.40433042339420566No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15380.2979684672641535No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11420.2212483677605093No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10440.20226208050960745No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8770.16990789713307064No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8100.15692747625745404No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7930.1536339366322976No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7620.14762807025701233No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7530.14588443163192952No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7110.13774745138154298No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6920.13406643650636815No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6520.12631693150600007No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6480.12554198100596325No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6420.12437955525590803No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6400.12399208000588964No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6260.12127975325576079No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC5440.10539326800500619No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5400.10461831750496937No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5330.10326215412990494No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5310.10287467887988655No Hit
GTTCTGGTGCTGAACGAGCAGTCCGCATACC5190.10054982737977612No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)