FastQCFastQC Report
Wed 8 May 2024
EGAF00007960391

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960391
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502022
Total Bases15.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA64471.284206668233663No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39970.7961802470808053No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38400.7649067172354996No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA31500.6274625414822458No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA29270.5830421774344551No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20260.4035679711247714No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14040.27966901848922954No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11150.22210182023895364No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10310.2053694857994271No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7840.15616845476891453No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7560.15059100995573899No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7380.1470055097186976No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7020.13983450924461477No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6980.13903773141416112No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6800.13545223117711974No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6570.13087075865201128No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6400.12748445287258325No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6210.12369975817792846No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6050.12051264685611389No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5620.11194728517873719No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5280.10517467361988121No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5090.10138997892522637No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5060.10079239555238614No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)