FastQCFastQC Report
Wed 8 May 2024
EGAF00007960392

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960392
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488293
Total Bases21.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA42750.8754989319937005No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA37680.7716678305853248No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT22060.45177792841593056No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG21600.4423573551126066No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG18300.3747749814148472No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG13490.27626855187356775No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG12730.26070412641590196No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC10750.2201547021972463No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9340.19127859707184006No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG9100.18636351534836665No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA9070.18574913013293248No Hit
GCTAGAGTTGGAAGTGGTGCGGGAGCTGGAGCCACCAGAGGAAG8950.1832915892711958No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG8860.18144843362489324No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8420.172437450465192No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG8230.16854634410077557No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT8200.16793195888534138No Hit
GGAGGTCGGCTGACGGCGCACACGTTTACCGTTCTCGGCGCGGT8000.16383605744911353No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA7460.15277712357129838No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7420.1519579432840528No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6840.14007982911899208No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6800.1392606488317465No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6690.1370079030418212No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6400.13106884595929083No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6360.13024966567204527No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6150.12594896916400605No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5870.12021470715328705No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5870.12021470715328705No Hit
CGCACCTGCGCCAGCCGGTACGTTAACACCCGCGCCGAAGGTCA5760.11796196136336175No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG5510.11284208456807696No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG4900.10034958518758204No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)