FastQCFastQC Report
Wed 8 May 2024
EGAF00007960393

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960393
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488293
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT86131.7638999535115187No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG23710.4855691152648103No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC23160.4743053863151837No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG22650.4638608376528027No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22180.4542354692776673No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC15280.31292686972780687No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC11670.23899584880389435No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9840.20151835066240967No Hit
GGTGCCCCGCGTGGCTCTCCAGCAACCCCGA9510.19476011329263374No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG9300.1904594167845945No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG9110.18656831042017805No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9080.18595392520474388No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG8310.1701847046752667No Hit
CGTAAAGAACTGGAAGAAAGCGATAAATATC8110.16608880323903885No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8020.16424564759273633No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7970.16322167223367937No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT7740.15851138558201736No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7650.15666822993571483No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7540.1544154841457895No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6580.13475515725189588No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6570.1345503621800845No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6400.13106884595929083No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT6090.1247201987331377No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5980.12246745294321239No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5830.11939552686604149No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5550.11366126485532252No Hit
TCTGGTGACGAAGATAGCGACTCCTCCGATG5380.11017974863452885No Hit
CTGGAAGAGGTCATCGTAGAAAAAACCAAAC5150.10546946198286686No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4960.1015783556184504No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCTG4900.10034958518758204No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)