FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007960394

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960394
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465255
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA41350.8887599273516674No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA36250.7791426207133723No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT23220.49908114904729667No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG21520.46254204683453165No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG19500.41912499596995195No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG12750.27404326659573786No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG11590.24911070273290992No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC10360.22267358760249759No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG8850.19021826740174744No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA8770.1884987802387938No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8610.18505980591288648No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT8360.17968640852865633No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG8160.17538769062127219No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8050.17302339577221093No Hit
GCTAGAGTTGGAAGTGGTGCGGGAGCTGGAGCCACCAGAGGAAG8020.17237858808610332No Hit
GGAGGTCGGCTGACGGCGCACACGTTTACCGTTCTCGGCGCGGT7940.17065910092314968No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7750.16657531891113475No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA7230.15539865235193603No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6480.13927846019924556No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6340.1362693576640767No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6290.13519467818723066No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6230.1339050628150154No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6220.1336901269196462No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6190.1330453192335386No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6070.13046608848910812No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5980.12853166543078526No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5790.12444788341877036No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG5510.11842967834843258No Hit
CGCACCTGCGCCAGCCGGTACGTTAACACCCGCGCCGAAGGTCA5460.11735499887158655No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)