FastQCFastQC Report
Wed 8 May 2024
EGAF00007960395

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960395
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465255
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT81881.7598951112830596No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38060.8180460177751986No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG23290.5005857003148811No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23040.49521230293065094No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC22840.4909135850232668No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG20870.44857121363553315No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC14330.30800313806407237No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10710.23019634394041977No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9120.196021536576716No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8780.188713716134163No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8740.18785397255268618No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG8080.17366820345831854No Hit
GGTGCCCCGCGTGGCTCTCCAGCAACCCCGA8030.1725935239814725No Hit
CGTAAAGAACTGGAAGAAAGCGATAAATATC7950.17087403681851887No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7530.1618467292130122No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7480.16077204973616618No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT7260.15604346003804367No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7000.1504551267584443No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6600.14185769094367603No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT6450.13863365251313794No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6040.1298212808030005No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5930.12745698595393923No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5890.12659724237246242No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5880.1263823064770932No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5380.11563551170863291No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5350.11499070402252527No Hit
TCTGGTGACGAAGATAGCGACTCCTCCGATG5230.11241147327809482No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4670.10037506313741926No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)