FastQCFastQC Report
Wed 8 May 2024
EGAF00007960396

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960396
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488243
Total Bases21.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA42440.8692392927292353No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA36920.7561808361819832No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT23340.4780406477921854No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG22400.45878793961203745No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG17200.3522835964878145No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG13510.27670647607851007No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG12750.26114045669881597No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC10360.21218942207056735No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG9640.1974426668687518No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9420.19293671389041933No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA9150.1874066806897385No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9010.1845392560671633No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG8970.18371999188928465No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG8430.17265992548792303No Hit
GGAGGTCGGCTGACGGCGCACACGTTTACCGTTCTCGGCGCGGT8380.1716358452655747No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA8340.1708165810876961No Hit
GCTAGAGTTGGAAGTGGTGCGGGAGCTGGAGCCACCAGAGGAAG8290.1697925008653478No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT7950.16282875535337937No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7070.14480494344004932No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6820.13968454232830785No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6700.13722674979467192No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6430.13169671659399113No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6350.13005818823823384No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6260.12821484383800688No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6160.1261666833933103No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5770.11817885765899358No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5620.11510661699194867No Hit
CGCACCTGCGCCAGCCGGTACGTTAACACCCGCGCCGAAGGTCA5520.11305845654725208No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG5390.1103958479691465No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG4910.10056467783460285No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)