FastQCFastQC Report
Wed 31 May 2023
EGAF00007960398

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960398
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471425
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA41030.8703399268176273No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA35740.7581269555072387No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT22130.46942779869544465No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG20930.44397306040197276No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG18380.3898817415283449No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG12490.2649414010712203No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG12370.26239592724187305No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC10870.23057750437503313No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG8950.18984992310547807No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8920.18921355464814127No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8690.18433472980855917No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA8470.17966802778808932No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG8320.17648618550140532No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA8150.1728800975764968No Hit
GGAGGTCGGCTGACGGCGCACACGTTTACCGTTCTCGGCGCGGT8090.1716073606618232No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT8060.17097099220448642No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7950.16863764119425145No Hit
GCTAGAGTTGGAAGTGGTGCGGGAGCTGGAGCCACCAGAGGAAG7880.1671527814604656No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6760.14339502571989182No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6600.14000106061409556No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6450.1368192183274116No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6300.1336373760407276No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6300.1336373760407276No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6260.13278888476427853No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6130.13003128811581904No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5800.12303123508511428No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5390.11433419950151137No Hit
CGCACCTGCGCCAGCCGGTACGTTAACACCCGCGCCGAAGGTCA5180.10987962030015379No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG4860.10309169008856128No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)