FastQCFastQC Report
Wed 8 May 2024
EGAF00007960399

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960399
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471425
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT88271.872408124303972No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37630.798218168319457No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG23360.4955189054462534No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC22110.46900355305722013No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22060.4679429389616588No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG21450.4550034469958106No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC14160.3003659118629686No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10440.22145622315320573No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9370.19875908150819324No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG9290.1970620989552951No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8980.19048629156281485No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG8350.1771225539587421No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT8120.17224372911916No Hit
GGTGCCCCGCGTGGCTCTCCAGCAACCCCGA8090.1716073606618232No Hit
CGTAAAGAACTGGAAGAAAGCGATAAATATC8080.17139523784271093No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7720.16375881635466935No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7410.1571830089621891No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7350.1559102720475155No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6720.14254653444344276No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6470.13724346396563608No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6350.13469799013628891No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6110.12960704247759453No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5950.12621307737179827No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5370.11390995386328685No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5350.11348570822506232No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5120.10860688338548019No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5090.1079705149281434No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG5000.106061409556133No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC4900.10394018136501033No Hit
TCTGGTGACGAAGATAGCGACTCCTCCGATG4880.1035159357267858No Hit
CTGGAAGAGGTCATCGTAGAAAAAACCAAAC4770.10118258471655088No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)