FastQCFastQC Report
Wed 8 May 2024
EGAF00007960400

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960400
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488105
Total Bases21.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG21620.4429374827137604No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT19450.3984798352813432No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG19390.3972505915735344No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16780.3437784902838528No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15830.324315464910214No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15200.3114084059782219No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG13190.2702287417666281No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12550.2571168088833345No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG12270.2513803382468936No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11950.24482437180524683No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11320.2319173128732547No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10950.22433697667510064No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG10900.22331260691859334No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG10420.21347865725612317No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10130.20753731266838077No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9140.18725479148953605No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA8910.18254269060960243No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC8700.17824033763227173No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG8660.1774208418270659No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8070.16533327870027964No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7880.1614406736255519No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7790.15959680806383872No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6640.13603630366417063No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6170.1264072279530019No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6010.12312924473217852No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5850.11985126151135514No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5780.1184171438522449No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5770.11821226990094344No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5570.1141147908749142No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5470.1120660513618996No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5300.10858319418977475No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5030.10305159750463527No Hit
AGATTCCGCCTTCAGACGACCACGGGTCATAACGCCCGCCGTGC4940.10120773194292212No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4920.10079798404031919No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)