FastQCFastQC Report
Wed 8 May 2024
EGAF00007960402

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960402
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469588
Total Bases20.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG20240.43101612477320544No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT18900.4024804722437541No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG18890.4022675196129373No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15880.3381687777370802No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14720.3134662725623312No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14320.3049481673296592No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG12830.2732182253379558No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11920.2538395359336269No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG11340.24148828334625244No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11260.23978466229971807No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG10960.23339608337521403No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10330.21998006763375555No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10200.21721168343313713No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9400.20017547296779306No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG9400.20017547296779306No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9190.19570346772064023No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG8550.18207449934836495No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA8250.17568592042386091No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC8210.17483410990059373No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7390.15737199417361603No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7140.152048178403196No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6860.14608550474032556No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6070.12926224690579827No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6060.12904929427498146No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6030.12841043638253108No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5900.12564205218191266No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5620.11967937851904223No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5460.11627213642597342No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5220.1111612732863702No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5130.10924469960901896No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5040.10732812593166777No Hit
AGATTCCGCCTTCAGACGACCACGGGTCATAACGCCCGCCGTGC4780.10179135753043092No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)