FastQCFastQC Report
Wed 8 May 2024
EGAF00007960403

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960403
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469588
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37420.7968687445164697No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24160.5144935560533915No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20900.4450709984071143No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT20240.43101612477320544No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG19870.42313687743298384No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG19450.4141928669386782No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14920.31772532517866725No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14180.301966830498224No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12000.25554315698016133No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG11920.2538395359336269No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC11430.24340485702360365No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11280.24021056756135165No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG10540.22445207288090838No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10340.22019302026457235No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10020.21337853607843474No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA9510.20251795190677785No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9230.19655527824390742No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC9160.19506460982818982No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8870.1888889835345026No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG8330.17738954147039532No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA8080.1720657256999753No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7660.16312171520566965No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7390.15737199417361603No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6960.14821503104849357No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6420.13671558898438632No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6240.1328824416296839No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6060.12904929427498146No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5900.12564205218191266No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5490.11691099431842382No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5390.11478146801025581No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5370.11435556274862219No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5340.11371670485617179No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5130.10924469960901896No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5030.10711517330085096No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4990.10626336277758375No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4920.10477269436186615No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4830.10285612068451494No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4740.10093954700716372No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)