FastQCFastQC Report
Wed 8 May 2024
EGAF00007960406

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960406
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475089
Total Bases20.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG20420.4298142032334994No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT19600.4125542793034568No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG19340.4070816204963702No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16130.3395153329165693No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15140.31867713207420084No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13850.2915243249159631No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG12570.26458200463492104No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12350.25995129333661693No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11650.24521721193292204No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG11600.24416477754694382No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10950.23048313052922717No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10770.2266943667397056No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG10220.21511758849394533No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9450.198910098949881No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG9350.1968052301779246No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9340.19659474330072893No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG8880.1869123469497294No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA8830.18585991256375123No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC8640.181860661897034No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7290.15344493347562246No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7140.15028763031768783No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7030.14797227466853577No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6470.13618500954557988No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6340.13344868014203654No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5810.12229287565066756No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5750.1210299543874937No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5640.11871459873834164No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5160.10861122863295086No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5150.10840074175575524No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5030.10587489922940754No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5030.10587489922940754No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4760.10019175354512523No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)