FastQCFastQC Report
Wed 8 May 2024
EGAF00007960407

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960407
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475089
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37910.7979557514486759No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25160.5295849830242333No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT20600.433602967023021No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG20150.4241310575492171No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19990.4207632675140869No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG19760.4159220693385871No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15680.33004342344276544No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14210.2991018524950062No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12300.25889885895063874No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12000.25258425263476947No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG11900.2504793838628131No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC11580.24374380379255256No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10320.21722245726590172No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10190.21448612786235843No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG10000.21048687719564121No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9530.2005939939674461No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA9510.2001730202130548No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC9330.1963842564235333No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9220.19406890077438124No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG8840.18607039944094686No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA8500.17891384561629506No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7730.16270635607223066No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7480.15744418414233965No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7430.15639174975636144No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG7110.14965616968610093No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6830.14376253712462295No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6050.12734456070336295No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5860.12334531003664576No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5740.12081946751029808No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5650.11892508561553729No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5260.1107160974049073No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5190.1092426892645378No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5050.10629587298379883No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5040.10608538610660319No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4990.10503295172062499No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4940.10398051733464678No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4860.10229662231708164No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)