FastQCFastQC Report
Wed 8 May 2024
EGAF00007960410

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960410
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527549
Total Bases23.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG22410.42479466362366336No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC21640.4101988630440016No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT20860.3954135066126559No Hit
GTAGCACTCGCGTTCGAAGTCTTCGATATCAGAGTCACAGAAGG18760.3556067777590328No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17320.3283107351165484No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG17150.3250882856379218No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC16720.31693738401551325No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG15790.29930868980890873No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15620.29608624033028214No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG15360.29115778818650023No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT15250.2890726738179771No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14960.2835755541191434No Hit
GAACGGACGAGTCGTCTTGCGCGGTTTTTTACGCGGAGACAGTT14810.2807322163438846No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14160.2684110859844299No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12820.2430106018587847No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC11660.22102212306345004No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11070.20983832781409878No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10170.19277830116254605No Hit
TTCGCTCTGCAGCGCGTCGGTCTGGTCGGCCAGTGCTTCCAGTG9370.17761383302783249No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9170.17382271599415408No Hit
CGGGCTCGGTGGGTGACGATGGTGGGTGGAAACGCCACGACGAC8480.16074336222796365No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8290.1571418010459692No Hit
GTGCTGAACATCAAAGTCCTGCAGAACGAATTTCAGGTACTCCA8230.15600446593586567No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT7890.14955956697861242No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA7820.14823267601682497No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA6880.13041442595853656No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA6530.12377997114959938No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6500.12321130359454761No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT6310.11960974241255315No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6270.11885151900581747No Hit
CCACTGTTCCGGAACCAGTGGACCTTCCATCGGCTGCTGAGGCA6270.11885151900581747No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG6190.11733507219234612No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG6060.11487084612045516No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5790.10975283812498934No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5300.10046460139247729No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)