FastQCFastQC Report
Wed 8 May 2024
EGAF00007960415

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960415
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences535519
Total Bases16.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA48360.9030491915319532No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42190.7878338583691709No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37950.7086583295830774No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA22390.41809907771713045No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA21280.39737152183209185No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20910.390462336537079No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG20850.38934192811086066No Hit
GGCGGCGATGACAACTCTAGCAGCGGCGGTA19140.357410287963639No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG16940.31632864566896784No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16410.3064317045707062No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA15710.29336027293149264No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG15620.29167966029216513No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15580.29093272134135295No Hit
ACCGGCCCGACTCTGACTACCCACTCTTGCT14010.261615367521974No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13420.250598017997494No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG12480.23304495265340724No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10860.20279392514551303No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA10730.2003663735553734No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA9780.18262657347358358No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT9480.17702453134249205No Hit
CCGAACGGTGGTACCCTGACTAACCTGCTGG9350.1745969797523524No Hit
GAAGGCGACGAATTTTCCTTCTGCGATTCCG8420.15723064914596868No Hit
GCGGACGAAGAGGAAGAGGAACTGCTGGCGC8230.1536826891296107No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7850.14658676909689478No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7810.14583983014608257No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7760.14490615645756733No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7490.13986431853958498No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG7230.13500921535930566No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG6960.12996737744132328No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6930.12940717322821413No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT6570.12268472267090429No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6290.11745615001521888No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT6250.11670921106440668No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG6210.11596227211359447No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC6190.11558880263818838No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGG5690.10625206575303585No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5630.10513165732681753No Hit
GCTGGTCACCTGATCGGTAAAGGCGCGAAAG5580.1041979836383023No Hit
GAAGACACCTCCATCTACCTGTCTCCGCCGC5530.10326430994978703No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)