FastQCFastQC Report
Wed 8 May 2024
EGAF00007960417

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960417
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536905
Total Bases16.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT52980.9867667464449017No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA42460.7908289175924976No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19550.36412400704035164No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18930.3525763403209134No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17710.32985351226008325No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12890.24007971615090193No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9260.17246999003548114No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8990.1674411674318548No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8980.1672549147428316No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8800.16390236634041402No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8650.1611085760050661No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA8060.1501196673526974No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC7710.14360082323688547No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7520.14006202214544472No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG7370.13726823181009676No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6560.12218176399921774No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG6130.11417289837122023No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5560.10355649509689796No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5510.10262523165178199No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)