FastQCFastQC Report
Wed 8 May 2024
EGAF00007960419

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960419
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517089
Total Bases16 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT49780.9626969438529925No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43260.8366064642643722No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA39480.7635049285519514No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18560.3589324081541089No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17730.3428810127463551No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16090.3111650025430825No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11860.22936090305537343No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8820.1705702499956487No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8800.17018346938341367No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8230.1591602219347153No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8050.1556791964246No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA8000.15471224489401245No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7260.14040136224131627No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC7140.13808067856790612No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG7060.13653355611896598No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5820.11255315816039405No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG5790.11197298724204151No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5530.1069448392829861No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5480.10597788775239853No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)