FastQCFastQC Report
Wed 8 May 2024
EGAF00007960420

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960420
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536352
Total Bases23.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA26640.49668874172185434No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA22080.41166994809378915No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT19900.3710249985084422No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19240.358719646799117No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC17880.33336316448899234No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12440.23193723524849355No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11690.21795388103335125No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9600.17898693395382137No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8740.16295268778712485No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8720.16257979834138775No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8640.16108824055843923No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG7800.14542688383747987No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG7750.14449466022313703No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7680.1431895471630571No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT6880.12827396933357196No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT6750.12585018793628064No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6370.11876528846727522No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6350.1183923990215381No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5670.10571415786647576No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)